Simulation resolution¶. It is now time to specify the resolution of the \(N\) –body simulations that will be run to map the 3D density field of the universe. There are two numbers you need to set here, namely size of the box (that will fix the largest mode your simulations will be able to probe) and the number of particles on a side (that will fix the shortest mode).
Goat Simulator is a small, broken and stupid game. It was made in a couple of weeks so don’t expect a game in the size and scope of GTA with goats. In fact, you’re better off not expecting anything at all actually.
MLFSOM: the X-ray diffraction simulation program start with a PDB, generate images MLFSOM is MOSFLM in reverse, so instead of processing images to get structure factors, you can start with structure factors and generate images.
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The sample file ("sample_md0.pdb") distributed with the current v0.1 of the scripts contains 21 snapshots (models, 0..20), separated by MODEL/ENDMDL pairs. While the sample is based on a trajectory file from AMBER, any MD simulation packages, or NMR ensembles, can be similarly handled as well. Now the ball is rolling.
Each name specifies a different snapshot in the tree, and together the names in a pathname will specify a path from the root snapshot to the snapshot you are naming. For example, suppose you include the pathname "snap1/snap2". This will identify a snapshot named "snap2" that was taken from the state of a root snapshot named "snap1".